(Comma separated, e.g.: LINC00602,PWAR6)
(Comma separated, e.g.: cg00039129,cg02625244)
(Comma separated, e.g.: RP11-117L5.4,BRD2-IT1)
(Comma separated, e.g.: cg19160520,cg01814149)
Due to the huge number of trans-QTL results, if you search results for all tumors (Pan-Cancer), please wait for a few minutes.
(Comma separated, e.g.: HCG22,C15orf59-AS1)
(Comma separated, e.g.: cg00247489,cg00373376)
Type | URL |
---|---|
ACC | https://drive.google.com/file/d/1UIkC0MwjUcW_42XMOlehC_5MtCGNhQZp/view?usp=sharing |
BLCA | https://drive.google.com/file/d/1sSpTWn8SdzyW0Mo064fOEq6oAwaqytOt/view?usp=sharing |
BRCA | https://drive.google.com/file/d/1oVwteHPelT7MQTeDlQmJ7F2hdERAtR_s/view?usp=sharing |
CESC | https://drive.google.com/file/d/1p3Ek95oSt3hoxQgpMDuzpgEto2fEzq_E/view?usp=sharing |
CHOL | https://drive.google.com/file/d/1vO3qcAniEsfGQxnfybG5FJRs0rLmHaww/view?usp=sharing |
COAD | https://drive.google.com/file/d/1CimKDi6Nj7yFfa47QeMzHLlHVV96NM2B/view?usp=sharing |
DLBC | https://drive.google.com/file/d/1iKJHsYs_8cg-M-ay4ulEpbPqWESGunxi/view?usp=sharing |
ESCA | https://drive.google.com/file/d/1VhrQsBq0UN-cc6KkI0FTQkQ9asCwLnIt/view?usp=sharing |
GBM | https://drive.google.com/file/d/11X-lH9XBa-zzhP5J-pLleI7ca6dw4Dkm/view?usp=sharing |
HNSC | https://drive.google.com/file/d/13xdCYRAauU5IgZlmXy4blBVh7K9skCw3/view?usp=sharing |
KICH | https://drive.google.com/file/d/1wOl1bqC4C43LfpwEfmtnWAGG0sgvI3KO/view?usp=sharing |
KIRC | https://drive.google.com/file/d/1iUftOC_LntmywZaSTjHfx8i4NZW3bXN-/view?usp=sharing |
KIRP | https://drive.google.com/file/d/1GeD3lr64HVfWVpIb-4FBqJsEXJH7_qfP/view?usp=sharing |
LAML | https://drive.google.com/file/d/1cunhD0Zfret6i5TMc0nmBhQSWvYiiFJb/view?usp=sharing |
LGG | https://drive.google.com/file/d/1Kf5-6Hqfb80wpgGk7KmcisPqQLBYpTfO/view?usp=sharing |
LIHC | https://drive.google.com/file/d/1XsK0zG1ZbfjkHP2KCNJNxtWzgNppO8Qm/view?usp=sharing |
LUAD | https://drive.google.com/file/d/1SaaVViHvfDjWPFUR7SLSE4rWi7k73YEG/view?usp=sharing |
LUSC | https://drive.google.com/file/d/18Mr7ci5r9GYMIH5VkyqpsISN-nU2r8gB/view?usp=sharing |
MESO | https://drive.google.com/file/d/1bkq6n1jCXoyiPZran67YLtMxnr-6_ysj/view?usp=sharing |
PAAD | https://drive.google.com/file/d/1h20513vGHl3xJru5okn-k7WHLW-gHdc8/view?usp=sharing |
PCPG | https://drive.google.com/file/d/1qlZxys40Q6jJEjd_7Rasj6jHJ9LE2HXi/view?usp=sharing |
PRAD | https://drive.google.com/file/d/1j1chG2JKZI1lKDXlAOF57mNvWFqw9Pyj/view?usp=sharing |
READ | https://drive.google.com/file/d/11umu0tsZNI989Z17XdbpQtdTU_lTaNBy/view?usp=sharing |
SARC | https://drive.google.com/file/d/1Iwft-h8T7BbvAFI_zzEDlkNbXn7ZsRIX/view?usp=sharing |
SKCM | https://drive.google.com/file/d/1Uxj3IroadQjAPsbqm0BUNLw_VqiU_G4z/view?usp=sharing |
STAD | https://drive.google.com/file/d/1R2hsDKmyG3U0mBJeRwQtbuGrUXp9wNEU/view?usp=sharing |
TGCT | https://drive.google.com/file/d/1uHGOwtgUsRCu0IWStE3Vy3ksKvTKA2EG/view?usp=sharing |
THCA | https://drive.google.com/file/d/1xYJ6rWqbnMtgZS3foA5ygjL7HAzqN18a/view?usp=sharing |
THYM | https://drive.google.com/file/d/1pLy_SpievN3vV0Xwxdsr4oDnXmn-4k5s/view?usp=sharing |
UCEC | https://drive.google.com/file/d/16VOybzTNahtg1IzgT92JVgWqFTT21eTi/view?usp=sharing |
UCS | https://drive.google.com/file/d/1sNj7geje4D3fT6A1lnR7hVYA02Ot-Rts/view?usp=sharing |
UVM | https://drive.google.com/file/d/1zrnoEsW44IVG5eTSGygoZKLEGlateBIw/view?usp=sharing |
Pan-cancer ncQTM (Pancan-ncQTM) is a database we developed to provide a comprehensive resource of ncQTMs across 32 human cancer types (http://bigdata.njmu.edu.cn/Pancan-QTM/). In Pancan-ncQTM, we systematically evaluate the crosstalk between various RNAs (mRNA, miRNA, lncRNA, snRNA, snoRNA, and rRNA) and DNAm CpG sites in a pan-cancer setting from TCGA database. Users can:
1) Browse or search cis-QTMs and trans-QTMs in tumor tissues across different cancer types;
2) Browse or search QTMs in adjacent normal tissues across different cancer types;
3) Browse or search associations of genome-wide CpG sites of DNA methylation with patient overall survival across different cancer types;
4) Browse or search associations of genome-wide RNAs with patient overall survival across different cancer types;
5) Browse or search correlations between RNAs and CpG sites across different cancer types;
6) Browse or search interaction effects on overall survival between RNAs and CpG sites across different cancer types;
7) Download all the ncQTM summary data across different cancer types.
Type | Tissue | Sample size | N_methy | N_ncrna | N_tests |
---|---|---|---|---|---|
ACC | tumor | 79 | 370433 | 17258 | 6392932714 |
BLCA | tumor | 408 | 370162 | 19447 | 7198540414 |
BRCA | tumor | 779 | 369888 | 19787 | 7318973856 |
CESC | tumor | 304 | 369480 | 18970 | 7009035600 |
CHOL | tumor | 36 | 362984 | 16240 | 5894860160 |
COAD | tumor | 293 | 369929 | 19364 | 7163305156 |
DLBC | tumor | 48 | 369673 | 18822 | 6957985206 |
ESCA | tumor | 161 | 369018 | 19736 | 7282939248 |
GBM | tumor | 49 | 370196 | 17430 | 6452516280 |
HNSC | tumor | 500 | 370258 | 19632 | 7268905056 |
KICH | tumor | 65 | 370143 | 16954 | 6275404422 |
KIRC | tumor | 317 | 370193 | 19646 | 7272811678 |
KIRP | tumor | 273 | 370125 | 19240 | 7121205000 |
LAML | tumor | 112 | 370392 | 19315 | 7154121480 |
LGG | tumor | 510 | 370271 | 19505 | 7222135855 |
LIHC | tumor | 371 | 369879 | 18806 | 6955944474 |
LUAD | tumor | 453 | 370071 | 19411 | 7183448181 |
LUSC | tumor | 370 | 370258 | 19651 | 7275939958 |
MESO | tumor | 86 | 370310 | 17520 | 6487831200 |
PAAD | tumor | 177 | 368890 | 18410 | 6791264900 |
PCPG | tumor | 178 | 370245 | 18383 | 6806213835 |
PRAD | tumor | 495 | 370255 | 19429 | 7193684395 |
READ | tumor | 97 | 369647 | 17249 | 6376041103 |
SARC | tumor | 259 | 368679 | 19233 | 7090803207 |
SKCM | tumor | 468 | 369613 | 19339 | 7147945807 |
TGCT | tumor | 134 | 370440 | 18636 | 6903519840 |
THCA | tumor | 502 | 370371 | 19335 | 7161123285 |
THYM | tumor | 119 | 370445 | 18026 | 6677641570 |
UCEC | tumor | 428 | 370387 | 19669 | 7285141903 |
UCS | tumor | 56 | 368718 | 17857 | 6584197326 |
UVM | tumor | 80 | 370419 | 15550 | 5760015450 |
BLCA | normal | 17 | 370395 | 14807 | 5484438765 |
BRCA | normal | 83 | 369598 | 18038 | 6666808724 |
COAD | normal | 19 | 369850 | 14069 | 5203419650 |
HNSC | normal | 20 | 368375 | 14369 | 5293180375 |
KIRC | normal | 24 | 370366 | 15702 | 5815486932 |
KIRP | normal | 23 | 369685 | 16015 | 5920505275 |
LIHC | normal | 41 | 370186 | 14732 | 5453580152 |
LUAD | normal | 21 | 369679 | 14451 | 5342231229 |
PRAD | normal | 35 | 369924 | 16415 | 6072302460 |
THCA | normal | 49 | 370324 | 16971 | 6284768604 |
UCEC | normal | 22 | 370383 | 15893 | 5886497019 |
PancanQTL: http://gong_lab.hzau.edu.cn/PancanQTL/
Pancan-meQTL: http://gong_lab.hzau.edu.cn/Pancan-meQTL/
ncRNA-eQTL: http://ibi.hzau.edu.cn/ncRNA-eQTL/
TCGA data download: https://portal.gdc.cancer.gov/repository
GENCODE: https://www.gencodegenes.org/
Copyright © 2021 Powered by Department of Epidemiology and Biostatistics, Nanjing Medical University, Nanjing, China